Changelog¶
Unreleased changes¶
Version 8¶
8.12.1 / 2019-03-17¶
- Minor changes in
setup.py
8.12.0 / 2019-03-17¶
- Adds a workaround for converting aanet ROOT files when the dtype dict is mixed up
[self.]log.once
can now be used to print a log message exactly once!- Fixes a problem where hit times could be overwritten by applying the calibration more than once.
8.11.0 / 2019-02-26¶
kp.toos.timed_cache()
now can be used to created LRU caches with timeout- Fixed a missing import (
healpy
) inkm3modules.plot.make_dom_plot
8.10.3 / 2019-02-19¶
- Changes dtype of time of Timeslice hits from integer to double
8.10.4 / 2019-02-16¶
- Bugfixes
8.10.2 / 2019-02-06¶
- Fixes
IndexError
when reading sparsely writtenTables
to HDF5
8.10.1 / 2019-02-01¶
- Changed dtype of
du
andfloor
of calibrated hits from<f8
to<u2
- Major performance upgrade for large HDF5 when reading with the
HDF5Pump
8.10.0 / 2019-01-18¶
- A new class
kp.io.daq.DMMonitor`
to able to communicate with the Detector Manager. It can be used to monitor e.g. CLB parameters in real time before they are put into the KM3NeT database - Performance improvement of the
HDF5Pump
when reading in lots ofTable
- Minor bug fixes
8.9.7 / 2019-01-14¶
- Bugfixes
8.9.6 / 2019-01-13¶
- Add verbosity argument to calibrate tool.
- Massive improvement of
HDF5Sink
when writingNDArrays
- Add
flush_frequency=...
option toHDF5Sink
to set the number of iterations to wait before the internal cache is dumped to the disk - Fixes consistency when reusing the
HDF5Pump
with multiple files.
8.9.5 / 2019-01-08¶
kp.hardware.Detector
now provides aTable
with DOM information via its.dom_table
property.kp.math.dist
is fixed, it had no return statement.
8.9.4 / 2019-01-05¶
TMCHRepump
now accepts aversion=...
parameter to force a specific version just like forTMCHData
.
8.9.3 / 2019-01-04¶
TMCHData
now accepts aversion=...
parameter to force a specific version.
8.9.2 / 2019-01-03¶
Table
can now be instantiated withfillna=True
when created fromdict
anddtype
where keys in thedict
are missing. Those will be filled with NaNs.- The
Module.only_if
parameter now also accepts a list of keys, which has to be present in the blob, otherwise theprocess
method is not called. - The
HDF5Sink
now also accepts “chunksize”, “complib” and “complevel as arguments.”
8.9.1 / 2018-12-15¶
- Fixed read-in of split tables when shuffling in
HDF5Pump
8.9.0 / 2018-12-15¶
- A new standard parameter called
blob_keys=['list', 'of', 'blob', 'keys']
can now be used to filter the blob keys before passing it to a module during the cycle
8.8.2 / 2018-12-13¶
- The
RandomState
is dead, long live theGlobalRandomState
! (We renamed it…)
8.8.1 / 2018-12-13¶
- Minor changes in Dockerfile and docs
8.8.0 / 2018-12-13¶
io.pandas
has been removed- DETX v3 supported (including the ability to
kp.hardware.Detector.add_comment()
which are preserved when writing - DUSJ readout fixed, now every parameter is written by default (with NaNs if missing)
HDF5Sink
now only writes instances ofTable
andNDArray
to simplify the implementation and avoid future bugsHDF5Sink
now can shuffle the blobs whenshuffle=True
, additionally ashuffle_function
can be defined to have more control (mutating).km3modules.mc.RandomState
can be used to set the global random seed of numpy to be able to create reproducible pipelines- In
HDF5Pump
when reading multiple files, each file is only opened when needed to avoid unneeded memory and computational overhead
8.6.0 / 2018-12-05¶
qtohdf5
can now be used to convert multiple files using the batch farm use the-i
option to indicate that the input path is an IRODS path if you convert files from IRODS to SPS for examplewtd
is the “what the DOM???” command line utility, which will print information (like DU and floor) for a given DOM (and DOM [O]ID).JHIST__XXX
is now parsed using reconstruction chains defined inio/aanet.py
8.5.0 / 2018-11-21¶
Module
can now require services with theself.require_service(service_name, [reason])
- Logging can now show deprecation warnings with
[self.]log.deprecate()
runinfo
optionally prints out the trigger parameters when-t
is used
8.4.1 / 2018-11-06¶
Vec3
is a new standard datatype for 3D vectors. Mainly used in RainbowAlga- The modules attached to a pipeline can now be configured using an external
file. The default filename is
pipeline.toml
and uses the TOML format. You can specify your own configuration file with theconfigfile
parameter in thePipeline
constructor. The module configuration has precedence over keyword arguments!
8.4.0 / 2018-10-14¶
- added Dusj fitinf enum names and extended reco enum to hold Dusj reconstruction information (range 200-299) * the
AanetPump
now reads the metadata usingJPrintMeta
, which will be automatically captures by theHDF5Sink
to dump it to/meta
. A simple table which can be read bymeta = pandas.read_hdf(filename, 'meta')
8.3.0 / 2018-09-20¶
tohdf5
can now convert multiple files in one shot (again). There is no merging anymore, this will be done byh5concat
in future.runtable
now accepts ranges of runs-r FROM_RUN-TO_RUN
- fixes a bug in
tohdf5
where the default output filename isdump.h5
now it’s original filename + .h5 if no output filename is specified - Adds
HDF5Header
which is a convenient way to access the/raw_header
data fromKM3HDF5
formatted files. It can be used likeheader = km3pipe.io.hdf5.HDF5Header.from_hdf5(filename)
8.2.1 / 2018-08-15¶
- prettier Blob when printed
- KM3HDF5 v5.1 - introducing a new raw_header definition to store file/MC info
- Read only aanet data when passing
bare=True
tokp.io.aanet.AanetPump
- AA: If
rec_type
(defined in JFitApplications.hh) is not available, use the JHistory (rec_stages
) to derive the fit name, likejhist__jgandalf__jprefit
- AA: If neither
rec_type
nor history are available, enumerate track names - names
generic_track_
, based on their dtype.
- AA: If neither
- AA: more robust track readout (segfaults etc form looping over empty pyroot vectors
8.1.4 / 2018-06-26¶
- tohdf5.py: - adds a time conversion from mc time to jte time.
- kp.shell.Script now implements addition, so you can concatenate multiple scripts together
8.1.3 / 2018-06-16¶
- minor fixes
8.1.2 / 2018-06-16¶
- Fix a new typo in stats.rv_kde.rvs
8.1.1 / 2018-06-16¶
- Fix a Python 2.7 syntax error (self. print)
8.1.0 / 2018-06-16¶
- Python 2.7 compatibility added, thanks to ROOT
8.0.5 / 2018-06-09¶
- New commands available to print the git revision number: km3pipe git and km3pipe git-short
- Include git revision hash in pip tar ball
8.0.4 / 2018-06-08¶
- Fix: Read all tracks in AanetPump
8.0.3 / 2018-06-08¶
- Introduce robust aanet header readout
- Update
tohdf5
to the new aanetpump
8.0.2 / 2018-06-07¶
- Fixes an issue where requirements.txt is not found when installing with pip install km3pipe
8.0.1 / 2018-06-07¶
- Completely rewrote Aanet file readout – supporting latest jpp/aanet only,
and using enumerated types to label
fitinf
vectors /rec_type
reconstruction types - Added triggered_hits = hits.triggered_rows syntactical sugar
- Fixed datatype bug when applying t0 calibration to timeslice hits
- Added
qrunprocessor
utility
8.0.0 / 2018-06-02¶
- replace all dataclasses with the
Table
class (subclass ofnp.recarray
) - KM3HDF5 Version 5.0:
group_id
replacesevent_id
in every table, and generalizes from it. Oldevent_id
structure is still supported - no more cython!
- python3 required!
- new fancy
self.print
function forkp.Modules
- unified colourful logging/printing to increase the rainbow unicorn factor
Detector
is now super fast when parsing DETX (hello SuperORCA!)- New functions to translate the detector or rotate a DOM or a DU using quaternions.
EvtPump
now reads any EVT file and supports additional parsers to create convenient datatypes. By default it tries to automatically apply known parsers but also supports user defined ones.- consolidated requirements: now everything is managed in
requirements.txt
there is also no morepip install km3pipe[full]
, onlypip install km3pipe
, so you always get the full load ;) - huge increase in code coverage by adding >200 new unit tests
- old Python 2.7 compatible version is available on the
legacy
branch, you can always update to the latest legacy withkm3pipe update legacy
- the Aanet-bindings are broken, since Aanet/ROOT are not working with Python 3 yet. Some things work, other may not, we are working on it. If you want to use aanet to read or convert ROOT files, use the legacy version
- a lot of bug fixes and performance improvements!
Version 7¶
7.18.1 / 2018-04-26¶
- IMPORTANT NOTE: This is probably the last release of v7, which means that this is also the last patch for Python 2.7 users. Please switch to Python 3 NOW!
- Fixed a bug, where
kp.io.hdf5.HDF5Pump
opened an HDF5 file multiple times Detector
is now super fast when parsing DETX files and also guesses the right floor IDs for non-standard (and faulty) DETX formats.
7.18 / 2018-04-17¶
- Fixed
kp.io.evt.EvtPump
, where the first blob was empty for every file while iterating through many files. - The
n_digits
parameter ofkp.io.evt.EvtPump
can now beNone
, indicating that no leading zeros should be generated. This is actually the default setting now.
7.17.4 / 2018-03-27¶
-s REGEX
inruntable
andkm3pipe detectors
now uses a not so strict regex - re.search instead re.match.kp.hardware.Detector
now allows missing UTM information in detector descriptions (for example det id 36 in the database)- Fixes Python 2.7 compatibility with detector -
AttributeError
(rfind
)
7.17.3 / 2018-03-02¶
- Fixes
KeyError
when accessing McTracks via the aanet API - Fixes lookup of DOMs
DBManager().via_clb_upi()
andDBManager().via_dom_id()
, since DOMs are not unique. The same DOM can have the very same DOM ID and DOM UPI in a different detector, so now you need to provide a DET ID too. - Fixes aanet crashing on mc_tracks (introduced in 7.17.XXX)
7.17.1 / 2018-02-28¶
- Fixed typo
ligiermirro
->ligiermirror
7.17.0 / 2018-02-27¶
triggersetup
command line utility added, which allows easy access to the trigger setup of a given run setupk40calib
now accepts-s
to select aJDAQTimeslice
stream. an empty string will use the original stream and ‘L1’, ‘L2’ and ‘SN’ will select the new streams introduced in Jpp v9kp.tools.AnyBar
added to control the AnyBar macOS app, including a pipeline integration:kp.Pipeline(anybar=True)
km3pipe runtable
is now a standalone command line tool:runtable
km3pipe runinfo
is now a standalone command line tool:runinfo
UTMInfo
added inkp.hardware
to make access to UTM information easier in detector filesDetector().utm_info
…ligiermirror
command line utility added
7.16.0 / 2018-01-28¶
km3pipe.plot
: Common plotting helpers- A handful utility functions for
km3pipe.shell.Script
, likecp
,iget
… kp.tools.bincenters
now lives inkp.plot
.kp.db.DBManager.trigger_setup
can now retrieve trigger setups for a given OID- Add
n_digits
option inkp.io.evt.EvtPump
for file number index when iterating over multiple files. kp.math
has some helpers for bootstrapping confidence intervals when fitting probability distributions via max LLH (in scipy.stats)- Docs: move statistics examples to own section, show some distribution fits
7.15.0 / 2018-01-19¶
TimeslicePump
now supports the readout of any stream (“L0”, “L1”, “SN”…)- Minor bugfixes (km3pipe has no attribute named hardware…)
7.14.3 / 2018-01-17¶
- add loguniform distribution (
kp.math
) - add contextmanager for pumps (
with HDF5Pump(fname) as h5: print(h5[0])
) - clean up makefile / installer docs
- debug compilation/makefile issues
7.14.1 / 2018-01-09¶
- Windows compatible version of sys.peak_memory. KM3Pipe should now compile and work under windows…
- fix issues with hit indexing when merging multiple h5 files
7.14.0 / 2017-12-22¶
core.pyx
andtools.pyx
have been “depyxed”Calibration.apply**
(should) always returns the hitsModule.finish
(and thus the pipeline!) actually return something now!Calibration
shortcut removed fromkm3pipe
, so now you have to usefrom km3pipe.calib import Calibration
or justkp.calib.Calibration
if youimporte km3pipe as kp
. This change was needed to be able to import __km3pipe__ in Julia.kp.io.hdf5.HDF5Pump
now accepts the path of a boolean cut mask, e.g.cut_mask='/pid/survives_precut'
. If the bool mask is false, the event is skipped.
7.13.2 / 2017-12-11¶
- makefile tuning
- linalg tuning (innerprod_1d etc)
- pandas mc utils simplification (is_neutrino takes Series, not DataFrame, etc)
7.13.2 / 2017-12-10¶
- add a makefile
- flake8 all the things
- make compatible for upcoming numpy 1.14
- add
nb2shpx
util for notebook -> sphinx gallery exampe - some pandas bits and bobs
7.13.0 / 2017-12-07¶
- Improved CLB raw data readout
- Pipelines now return a
finish blob
which contains the return values of each modules finish method (this is for Tommaso) TimesliceParser
now reads all timeslice streams (L0, L1, L2, SN)TimesliceParser
now returns the blob even if it was not able to parse the dataTMCHRepump
now has an iterator interface- Fixed bug in
StreamDS
where it tried to create a session in Lyon and failed. Now it uses the permanent session which was created by Cristiano - Some smaller bugfixes and name-consistency-changes
7.12.1 / 2017-11-28¶
kp.math
:zenith, azimuth, phi, theta
now follow the correct km3net definitions (finally)- JFit pump now follows multipump paradigm
- improved logging in IO
7.12.0 / 2017-11-24¶
- Added preliminary
kp.io.jpp.FitPump
, which readsJFit
objects. However, it does not yet read thefitinf
vector, yet. Calibration
moved tokp.calib
, since core.pyx was Cython and numba does not like cython files.streamds
now requires theget
command to retrieve info on command linestreamds
can now upload to runsummary tables- remove obsolete
kp.dev
(now resides inkp.tools
- fixes EOF hang in
kp.io.daq.TMCHRepump
7.11.0 / 2017-11-12¶
- Hotfix of the SummaryslicePump (rates/fifos/hrvs reference issue)
Geometry
has been renamed toCalibration
- aanetpump now does not convert MC times by default
7.10.0 / 2017-11-07¶
- JPPPump removed
- New
k40calib
command line tool to calibrate DOMs using the K40 method TimeslicePump
andSummaryslicePump
now add meta information about the slices to the blob:blob['TimesliceInfo']
andblob['SummarysliceInfo']
SummaryslicePump
now reads out FIFO status and HRV for each PMTkp.shell.qsub()
can be used to submit jobs to SGE clusters
7.9.1 / 2017-11-01¶
- Massiv(!) speedup of the JPP timeslice pump (factor 3 to 4), now only about 8% slower compared to raw JPP readout. We are at the I/O limit of ROOT ;)
DTypeAttr
now allows adding of additional fields to the numpy array using the.append_fields
method.- merge
kp.dev
intokp.tools
7.9.0 / 2017-10-27¶
- New command line utility to plot the trigger contributions:
triggermap
- fix wrong spaceangle computation (duh!)
- KM3HDF5 Version 4.4 (minimum 4.1): RawHit time is now int32 = instead of float32 and CRawHit*.time/CMcHit*.time is float64 fixes bugs which occured due to precision loss for large hit times
7.8.1 / 2017-10-23¶
- Fixes the
io.jpp.EventPump
to useRawHitSeries
7.8.0 / 2017-10-23¶
- A preliminary version of
SummaryslicePump
- A new pump for JPP events has been added:
io.jpp.EventPump
. This will replace theJPPPump
soon. - several changes to km3modules.k40 to improve the calibration procedure
7.7.1 / 2017-10-12¶
- (aanet/tohd5) run id is now read from header, per default; if that fails
(or the flag
--ignore-run-id-from-header
is set, fall back to theevent.run_id
7.7.0 / 2017-10-11¶
- (aanet/tohd5) new option to read run ID from header, not event. in old versions of JTE, the event.run_id is overwritten with the default, 1.
- there is now a new command line utility called
streamds
for non-pythonistas - The new
km3pipe.ahrs
now contains AHRS calibration routines
7.6.1 / 2017-10-09¶
HDF5Sink
now uses the newHDF5MetaData
class two write more verbose metadata to the files (e.g. file conversion parameters) HDF5 metadata now contains much more information; e.g. if the mc hit time correction was applied, the aa-format, whether jppy was used etc- introduce “services” to the pipeline model. these are addressed via the
expose
method - aa/gand: fix up-vs-downgoing normalisation (now difference over sum)
- fix automatic JTE/MC time conversion
- fix the check if mc time correction needs to be applied
h5tree
CLI util, to print just the structure + nevents + nrows. less verbose thanptdump
- KM3HDF5 4.3: introduce richer metadata
7.5.5 / 2017-09-27¶
- Option to Ignore hits in pumps
- fix aanet fitinf enum
7.5.4 / 2017-09-25¶
- fix aanet (optional) 4-element event.weight vector readout. the weights can now be read again :-)
- Use mc_t to detect if MC time conversion (from JTE to MC time) should be applied. Should be more reliable since some MC could use positive DET_ID which should only be used for real data
7.5.3 / 2017-09-23¶
- Fixed bug which converted MC times in real data. Now it checks for a positive DET_ID and does not convert (even if told so…)
- Fixes zt-plot, which did not use the newly implemented datatypes
7.5.2 / 2017-09-22¶
- fixed bug in math.spatial_angle (zenith vs latitude)
- (aanet) jgandalf_new now computes a ton of fit-spread-related metrics (updated in tohdf5 help string, too)
- added usage warning to math.azimuth. for rest-of-world compatible coordinates, use KM3Astro
- accept coords in polygon containment (contains_xy)
7.5.1 / 2017-09-19¶
- The AANetPump now automatically converts hit times from JTE time to MC time. This should be now the default behaviour for all pumps.
tohdf5
now has the option to--do-not-correct-mc-times
in case the automatic conversion from JTE to MC hit time is not wanted- HDF5 version updated to 4.2 due to the new handling of JTE/MC times. It is however backwards compatible to 4.1.
- Freezes six-dependency to version 1.10 as the metaclass stuff for Python 2 is broken in 1.11
7.5.0 / 2017-09-14¶
- Adds sorting for
***Series`
and other DTypeAttr subclasses.
7.4.2 / 2017-09-11¶
- Numpy style slicing for
***Series
- skip aanet header, optionally
7.4.1 / 2017-08-28¶
- minor fixes for i3 files + old aanet
- Add arrival timestamp to controlhost Prefix
7.4.0 / 2017-08-18¶
- Introduces
StreamDS
inkm3pipe.db
which allows easy access to all streamds tables
7.3.2 / 2017-08-08¶
- add
i3shower2hdf5
CLI util for converting orcadusj files - add
kp.math.space_angle
7.3.1 / 2017-08-02¶
- add
i3toroot
andi3root2hdf5
CLI utils for converting I3 files - drop deprecated
h5tree
, fromkm3pipe.utils
(useptdump
instead) - drop deprecated
km3pipe.io.hdf5.H5Mono
- read aanet
mc_id = evt.frame_index - 1
7.2.5 / 2017-07-20¶
- drop
read_hdf5
andGenericPump
from top level module import (would make pytables a hard requirement)
7.2.3 / 2017-07-19¶
- No more error messages in
Detector
orGeometry
(which usesDetector
) when reading in corrupt DETX with negative line ids. - Fixes “TypeError: data type not understood” for Geometry.apply
- Various fixes to support the new HitSeries format (e.g. for RainbowaAlga2)
- New styles
- SciPy histogram showoff by Moritz
- Minor updates in docs
- Skeleton for future project bootstrap
7.2.2 / 2017-07-11¶
AANetPump
now parses the full header andHDF5Pump
writes it to /header as attributes
7.2.1 / 2017-07-11¶
- Fixes
HDF5Pump
for Python3
7.2.0 / 2017-07-11¶
- KM5HDF5 v4.1 now have DU and Floor information when calibrating
- Added 5 last lines in: daq.py - TMCHdata for reading the monitoring file
7.1.1 / 2017-07-11¶
- Fixed bug with aanet pump
7.1.0 / 2017-07-11¶
- Increased performance for Geometry.apply
- Changed type of time to float in
RawHitSeries
- Introducing
CRawHitSeries
andCMcHitSeries
which represent calibrated hit series - New command line argument to apply geometry/time calibration to an HDF5 file
usage:
calibrate DETXFILE HDF5FILE
7.0.0 / 2017-07-09¶
- New KM3HDF5 version 4.0
- HDF5Pump now creates
RawHitSeries
. The other pumps will be updated too. Geometry.apply()
will returnHitSeries
if aRawHitSeries
instance is the input.- Several bug fixes and speedups.
Version 6¶
6.9.2 / 2017-07-06¶
- Hotfix
- HDF5 version was accidentally set to 4.3 in km3pipe v6.9.1, now it is 3.4
- minor change in EvtPump
6.9.1 / 2017-07-04¶
- Last version freeze before 7.0
- Fix event_id and run_id
- add
MCHitSeries
to represent Monte Carlo hitseries - add
MCTrackSeries
to represent Monte Carlo trackseries - add
MCHit
to represent Monte Carlo hits - add
MCTrack
to represent Monte Carlo tracks - add run id to event_info
6.9.0 / 2017-07-03¶
- add
TMCHRepump
to replay IO_MONIT dumps - add
RawHitSeries
to represent uncalibrated hitseries - use
RawHitSeries
and nested structure in HDF5 files when converting from aanet - HDF5 version changed from to 3.3. Only the hits-readout is affected though! DST, reco and track readout were not changed and should be compatible down to 3.0
6.8.2 / 2017-06-20¶
- add option to create default config file
- fix wrong readout in io.root.get_hist3d
6.8.1 / 2017-06-15¶
- DOI citation added
- tohdf5: aa pump: make zed correction (mc tracks) optional
6.8.0 / 2017-06-13¶
- minor bugfixes
- git repository changed,
km3pipe update develop
is broken for all versions below 6.8.0
6.7.1 / 2017-06-08¶
- ControlHost improvements
- Change
every
behavior in pipeline - h5chain multifile fix
6.7.0 / 2017-05-08¶
totmonitor
command line utility added- bump library versions (scipy >=0.19)
6.6.6 / 2017-04-03¶
- change blosc compression -> zlib compression
- add corsika evt tag reader (seamuon/seaneutrino)
6.5.5 / 2017-03-29¶
- fix decoding issues in EvtPump
6.5.4 / 2017-03-21¶
- fix aanet mc_tracks usr backwards compat
6.5.3 / 2017-03-21¶
- Show initialisation time for pipeline and modules.
- Doc update / more examples
- aanet: fix
mc_tracks.usr
readout (use.getusr()
)
6.5.2 / 2017-03-12¶
- Support for KM3PIPE_DEBUG env variable to enable line tracing (set it to 1)
6.5.1 / 2017-03-12¶
- Fixed Cython/numpy dependency, now they should install automatically.
6.5.0 / 2017-03-11¶
- remove astro stuff, move to git.km3net.de/moritz/km3astro
- fixed HDF5 version warning
- some cleanup in __init__.pys, so be prepared to change some import statements * split up tools into tools/math/sys/dev/time/mc * stuff under km3modules is now in km3modules.common
6.4.4 / 2017-02-27¶
- h5concat (multi-h5-to-h5) deprecated because buggy. Going to drop all event_id for 7.0 (for now use ptconcat
- Clean up setup.py
6.4.3 / 2017-02-22¶
- Fix pyroot segfault when reading aanet header
6.4.2 / 2017-02-21¶
- Fix aanet header
- style update
6.4.1 / 2017-02-16¶
- API doc fixes
- add missing requirements to setup.py
- minor py2/py3 compat fix
6.4.0 / 2017-02-08¶
- K40 calibration module from Jonas!
- Pushover client! Push messages to your mobile phone or computer via
pushover the message you want
. - Minor bugfixes
6.3.0 / 2017-01-21¶
- Introduces BinaryStruct which makes handling binary data much more easier.
- Cuckoo now allows args and kwargs to be passed to the callback function.
- km3modules.plot module added including a unified DOM plotter
- km3modules.fit module added including k40 coincidence fit
6.2.2 / 2017-01-19¶
- add
rundetsn
cmd tool
6.2.1 / 2017-01-17¶
- Use numpy-style imports
- AanetPump: Don’t use evt.id for event_id by default, until we all agree on it
6.2.0 / 2017-01-16¶
- The DB client now automatically uses the production cookie on Lyon. No need to deal with session requests anymore…
- New command line utility to download runs from iRODS: km3pipe retrieve …
- Integrates the controlhost package
6.1.1 / 2017-01-12¶
- H5Chain now is just a Multifile pd.HDFStore
- prettyln for nicely formatted headers
- Online DAQ readout is now Python3 proof
6.1.0 / 2017-01-02¶
- H5Pump now supports multiple files
- h5concat util for concatenating multiple H5 files
6.0.4 / 2016-12-21¶
- fix: H5Sink in py3 actually creates indextables + closes file now
- HDF5 3.1: Change compression to BLOSC, fallback to zlib
- MergeDF module
- Easier access to seconds in timer
6.0.3¶
- Fix Dataclass + IO conversion signatures towards consistency
- Ask for requesting new DB session when session expired.
6.0.2¶
- Make blob ordered by default + actually use it in the pumps.
6.0.1¶
- FIX freeze numpy version
6.0.0 2016-11-29¶
- change all bool dataclasses to int
- add new fields to event_info: livetime_sec, n_evs_gen, n_files_gen
- update KM3HDF -> v3
Version 5¶
5.5.3 / 2016/11/28¶
- Add fix_event_id option to h5pump
5.5.2 / 2016-11-24¶
- Updated docs
5.5.1 / 2016-11-24¶
- Cuckoo now can be called directly
- CHPump uses Cuckoo for log.warn to avoid spamming in case of high network traffic
- DOM class to represent DOMs retrieved by the DBManager
5.5 / 2016-11-18¶
- New
KM3DataFrame + KM3Array
dataclasses, np/pandas subclasses + metadata - replaced
ArrayTaco
withKM3Array
H5Mono
pump to read HDF5 with flat table structure
5.4 / 2016-11-08¶
- Add a bunch of useful km3modules
5.3.3 / 2016-11-04¶
- Fix time calib application
5.3.2 / 2016-11-03¶
- add preliminary bootstrap script
5.3.0 / 2016-11-03¶
- Detector.dom_positions now returns an OrderedDict instead of a list
- Cache DOM positions in Detector
- pld3 function in tools, to calculate point-line-distance in 3d
5.2.2 / 2016-10-26¶
- Fixes Cython dependency
kp.io.pandas.H5Chain
now returns N _events_, not _rows_
5.2.0 / 2016-10-25¶
- Introduce
configure
method inModule
, so you no longer need to override__init__
and callsuper
. You can, though ;)
5.1.5 / 2016-10-24¶
- DB/Dataclass bugfixes
5.1.2 / 2016-10-20¶
- Unify Reco + Wrapper dataclass. Reco(map, dtype) -> ArrayTaco.from_dict()
- add
to='pandas'
option toDataclass.serialise()
- Tweak internal array/dataframe handling
5.1.0 / 2016-10-20¶
- …
5.0.0 / 2016-10-18¶
- Major dataclass refactor: * hits now always have pos_x, .., dir_y, .., t0 * completely flat hit datastructure
Version 4¶
4.9.0 / 2016-10-14¶
- New plot style handling and new styles: talk, poster, notebook (load them using km3pipe.style.use(…)) Just like in previous versions: import km3pipe.style will load the default style.
4.8.3 / 2016-10-13¶
- Fixes t0 application in HitSeries
4.8.2 / 2016-10-13¶
- Fixes geometry application in HitSeries
4.8.1 / 2016-10-12¶
- Forcing matplotlib 2.0.0b4 as dependency. Don’t blame us!
- New unified style for all plots, using import km3pipe.style
- aanet / jgandalf: write zeroed row if no track in event
- fix string handling in H5 attributes
4.8.0 / 2016-10-11¶
- Group frames in summary slices under /timeslices/slice_id/frame_id
when using
tohdf5 -j -s FILE.root
hdf2root
is now it’s own commandtohdf5
andhdf2root
no longerkm3pipe
CLI subcommands- Use zlib instead of blosc for compatibility reasons
- add CLI option to make DB connection non-permanent
tohdf5
/GenericPump
now supports multiple input files for aanet files
4.7.1 / 2016-09-29¶
- Improved documentation
- Fixed event_id indexing for the /hits table in HDF5
- root sub-package added (via rootpy)
- Added arguments to allow optional parsing of L0 data and summaryslices when using the JPPPump
- New command line utility to convert to HDF5:
tohdf5
4.7.0 / 2016-09-25¶
- Adds summary slice readout support via jppy
- Introducing astro package
- Use BLOSC compression library for HDF5
4.6.0¶
- …
4.5.1¶
- Bugfixes
4.5.0¶
- Full L0 readout support via
JPPPump
4.4.1¶
- Bugfixes
4.4.0¶
- JEvt/JGandalf support
- Minor HDF5 Improvements
4.3.0¶
- Introduces HDF5 format versioning
4.2.2¶
- Bugfixes
4.2.1¶
- Bugfixes
4.2.0¶
- …
4.1.2¶
- Bugfixes
4.1.1 / 2016-08-09¶
- Bugfixes
4.1.0 / 2016-08-04¶
- Ability to use simple functions as modules