:mod:`km3pipe.utils.qtohdf5`
============================

.. py:module:: km3pipe.utils.qtohdf5

.. autoapi-nested-parse::

   Convert ROOT files to HDF5 on the SGE.

   The ``INPUT_PATH`` will be scanned recursively and if ``-s`` is specified, a
   substring will be used to filter the files. You can for example convert
   all numu CC files in ``/in2p3/km3net/mc/prod/v4/JTE_r2356`` if you call
   the script with ``-i -s numuCC`` (``-i`` indicates that the path is an
   IRODS path).

   Before constructing the job scripts, the ``OUTPUT_PATH`` will be traversed
   to find files which have already been converted to avoid multiple conversions.

       Usage:
           qtohdf5.py INPUT_PATH OUTPUT_PATH [options]
           qtohdf5.py (-h | --help)

       Options:
           INPUT_PATH     Path the the files (local or full IRODS path -> use -i).
           OUTPUT_PATH    Path to store the converted HDF5 files.
           -i             Indicates that the INPUT_PATH is an IRODS path.
           -s SUBSTRING   String to match on filenames.
           -n N_FILES     Number of files to process per job [default: 10].
           -e ET          Estimated walltime per file in minutes [default: 15].
           -m VMEM        Estimated vmem for a job [default: 8G].
           -j JOBNAME     The name of the submitted jobs [default: tohdf5].
           -l LOG_PATH    Path of the job log files [default: qlogs].
           -q             Dryrun: don't submit jobs, just print the first jobscript.
           -h --help      Show this screen.

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Module Contents
---------------







Functions
~~~~~~~~~
.. autoapisummary::


   km3pipe.utils.qtohdf5.mkdir
   km3pipe.utils.qtohdf5.main
























.. function:: mkdir(path)

   
   Create folder if it does not exist.















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.. function:: main()